PHATRDRAFT_43359 hypothetical loc588416 (RRM1_TatSF1_like)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_43359 chr_2 hypothetical loc588416 (RRM1_TatSF1_like) 238226 240358 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0169

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM1_TatSF1_like RNA recognition motif 1 in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins; This subfamily... cl17169 151.532 1.81E-43 412 - 511 specific 240727
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 88.0478 9.08E-21 556 - 651 superfamily 266524
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 88.0478 9.08E-21 556 - 651 superfamily 266524
DUF4339 superfamily Domain of unknown function (DUF4339); This domain is found in bacteria, archaea and eukaryotes, and... - 36.8159 0.00203658 220 - 264 superfamily 206405
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 57.2642 3.93E-09 302 - 527 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
268839 Not available 194212 101088 Not available Cre17.g707050.t1.2 AT5G16260.1 311360

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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