PHATRDRAFT_43371 Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_43371	chr_2		269050	273283	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0109

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0177	0.30	0.0000001 630

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PDZ_signaling		PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May...	cl00117	41.0131	0.000235267	806 - 877	specific	238492
PDZ superfamily		PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)....	-	41.0131	0.000235267	806 - 877	superfamily	260201
PHD		PHD zinc finger; The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in...	cl17445	44.125	1.66E-05	1190 - 1239	specific	214584
PHD superfamily		PHD-finger; PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner...	-	44.125	1.66E-05	1190 - 1239	superfamily	266687

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
6567		Not available	257879	293772	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments