PHATRDRAFT_43604 choline dehydrogenase (BetA)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_43604 chr_2 choline dehydrogenase (BetA) 948150 949796 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0120

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0096
 0.43

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GMC_oxred_C superfamily GMC oxidoreductase; This domain found associated with pfam00732. - 130.969 4.91E-36 382 - 515 superfamily 253079
GMC_oxred_C superfamily GMC oxidoreductase; This domain found associated with pfam00732. - 130.969 4.91E-36 382 - 515 superfamily 253079
NAD_binding_8 superfamily NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain. - 39.5748 0.0016316 21 - 52 superfamily 267487
NAD_binding_8 superfamily NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain. - 39.5748 0.0016316 21 - 52 superfamily 267487
BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] - 260.464 4.45E-79 15 - 526 multi-dom 225186

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 244840 Not available Not available Not available AT1G14190.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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