PHATRDRAFT_43695 pentatricopeptiderepeat-containing protein (PPR_2)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_43695 chr_2 pentatricopeptiderepeat-containing protein (PPR_2) 1209503 1212840 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0070

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0038
 0.40

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PPR_2 PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found... cl03252 47.3974 8.68E-07 296 - 342 specific 257477
PPR_2 superfamily PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found... - 40.0786 0.00024316 521 - 580 superfamily 261658
PPR_2 PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found... cl03252 47.3974 8.68E-07 296 - 342 specific 257477
PPR_2 superfamily PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found... - 40.0786 0.00024316 521 - 580 superfamily 261658
PPR_2 PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found... cl03252 47.3974 8.68E-07 296 - 342 specific 257477
PPR_2 superfamily PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found... - 40.0786 0.00024316 521 - 580 superfamily 261658
PPR_2 superfamily PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found... - 40.0786 0.00024316 521 - 580 superfamily 261658
PPR_2 superfamily PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found... - 40.0786 0.00024316 521 - 580 superfamily 261658

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
bd1811 Not available 266013 321478 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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