PHATRDRAFT_45195 extracellular solute-bindingfamily 3 (PBPb)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_45195	chr_6	extracellular solute-bindingfamily 3 (PBPb)	454404	455165	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0079

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0061	0.31	0.000015 1500

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PBPb superfamily		Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-...	-	72.0206	1.31E-15	46 - 235	superfamily	238078
PBPb superfamily		Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-...	-	72.0206	1.31E-15	46 - 235	superfamily	238078
PBPb		Bacterial periplasmic substrate-binding proteins; bacterial proteins, eukaryotic ones are in PBPe	-	98.5545	8.57E-25	19 - 234	multi-dom	214497

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	236310	Not available	209469	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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