PHATRDRAFT_46588 vacuolar protein sorting 39 (COP-gamma_platf superfamily)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_46588	chr_10	vacuolar protein sorting 39 (COP-gamma_platf superfamily)	814026	817703	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0144

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
COP-gamma_platf superfamily		Coatomer gamma subunit appendage platform subdomain; COPI-coated vesicles function in retrograde...	-	71.8277	3.37E-14	1067 - 1197	superfamily	255017
Vps39_2 superfamily		Vacuolar sorting protein 39 domain 2; This domain is found on the vacuolar sorting protein Vps39...	-	47.6109	1.79E-06	988 - 1053	superfamily	150957

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
24171		Not available	251665	197519	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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