PHATRDRAFT_46726 (CAP_GLY)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_46726 chr_11 (CAP_GLY) 288321 292533 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0189

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CAP_GLY CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of... cl08315 73.3179 1.89E-15 21 - 73 specific 250520
CAP_GLY superfamily CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of... - 73.3179 1.89E-15 21 - 73 superfamily 263584
ApoLp-III_like superfamily Apolipophorin-III and similar insect proteins; Exchangeable apolipoproteins play vital roles in the... - 39.5647 0.00093119 387 - 500 superfamily 267466
GrpE superfamily GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds... - 40.1094 0.00199693 183 - 251 superfamily 261574
TMF_TATA_bd superfamily TATA element modulatory factor 1 TATA binding; This is the C-terminal conserved coiled coil region... - 37.1686 0.00471892 495 - 603 superfamily 256982
COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] - 38.894 0.005986 379 - 656 multi-dom 224259
SH3_and_anchor SH3 domain protein; Members of this protein family have a signal peptide, a strongly conserved SH3... - 39.9914 0.00154837 1031 - 1168 multi-dom 234501

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
24828 Not available 199035 166101 373890 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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