PHATRDRAFT_48220 cef (clone eighty-four) transporter (COG5028)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_48220 chr_16 cef (clone eighty-four) transporter (COG5028) 551733 554858 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0387

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sec23_BS superfamily Sec23/Sec24 beta-sandwich domain; Sec23/Sec24 beta-sandwich domain. - 90.2646 3.52E-21 652 - 742 superfamily 254596
Sec23_BS superfamily Sec23/Sec24 beta-sandwich domain; Sec23/Sec24 beta-sandwich domain. - 90.2646 3.52E-21 652 - 742 superfamily 254596
Sec23_helical superfamily Sec23/Sec24 helical domain; COPII-coated vesicles carry proteins from the endoplasmic reticulum to... - 68.7121 1.13E-13 758 - 880 superfamily 252815
Sec23_helical superfamily Sec23/Sec24 helical domain; COPII-coated vesicles carry proteins from the endoplasmic reticulum to... - 68.7121 1.13E-13 758 - 880 superfamily 252815
vWFA superfamily Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von... - 51.1197 3.58E-07 523 - 660 superfamily 260163
Gelsolin Gelsolin repeat; Gelsolin repeat. cl15697 45.7554 5.16E-06 911 - 962 specific 250009
ADF_gelsolin superfamily Actin depolymerization factor/cofilin- and gelsolin-like domains; Actin depolymerization factor/... - 45.7554 5.16E-06 911 - 962 superfamily 265764
zf-Sec23_Sec24 superfamily Sec23/Sec24 zinc finger; COPII-coated vesicles carry proteins from the endoplasmic reticulum to the... - 43.7036 1.31E-05 318 - 345 superfamily 252812
Pro-rich_19 superfamily Proline-rich 19; This family includes proline-rich protein 19. - 38.7314 0.00677584 90 - 146 superfamily 259586
COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and... - 249.709 8.70E-70 182 - 1036 multi-dom 227361

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
20796 Not available 237672 16043 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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