PHATRDRAFT_48358 tetratricopeptide tpr_2 repeat protein (TPR_12)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_48358	chr_17	tetratricopeptide tpr_2 repeat protein (TPR_12)	225465	226277	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0384

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0065	0.38	270 430

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TPR superfamily		Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF...	-	49.3008	4.62E-08	148 - 264	superfamily	238112
TPR superfamily		Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF...	-	49.3008	4.62E-08	148 - 264	superfamily	238112
PaaA_PaaC superfamily		Phenylacetic acid catabolic protein; This family includes proteins such as PaaA and PaaC that are...	-	36.7376	0.00355055	105 - 156	superfamily	260892
TPR_12		Tetratricopeptide repeat; Tetratricopeptide repeat.	-	46.6014	3.19E-07	190 - 261	multi-dom	257749
TPR_12		Tetratricopeptide repeat; Tetratricopeptide repeat.	-	46.6014	3.19E-07	190 - 261	multi-dom	257749
TPR_11		TPR repeat; TPR repeat.	-	33.8263	0.00604104	98 - 179	multi-dom	257739

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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