PHATRDRAFT_48885 (PDZ_signaling)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_48885 chr_19 (PDZ_signaling) 576592 581289 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0038

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May... cl00117 48.7171 7.89E-07 535 - 610 specific 238492
PDZ superfamily PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif).... - 48.7171 7.89E-07 535 - 610 superfamily 260201
ARM superfamily Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence... - 39.6052 0.000916159 1096 - 1212 superfamily 237987
ARM superfamily Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence... - 39.6052 0.000916159 1096 - 1212 superfamily 237987
HEAT_2 HEAT repeats; This family includes multiple HEAT repeats. - 42.3283 0.000103725 1104 - 1212 multi-dom 257956

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 167614 244071 Not available Not available Not available 556438

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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