PHATRDRAFT_48985 (SQS_PSY)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_48985 chr_20 (SQS_PSY) 227738 235064 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0343

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0038
 0.40

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SQS_PSY Squalene/phytoene synthase; Squalene/phytoene synthase. cl00210 100.846 9.42E-23 1901 - 2172 specific 249904
Isoprenoid_Biosyn_C1 superfamily Isoprenoid Biosynthesis enzymes, Class 1; Superfamily of trans-isoprenyl diphosphate synthases (... - 100.846 9.42E-23 1901 - 2172 superfamily 260263
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 97.4067 1.71E-22 680 - 792 superfamily 266525
Trypsin_2 Trypsin-like peptidase domain; This family includes trypsin like peptidase domains. cl19303 55.7122 1.14E-08 1565 - 1785 specific 257693
Trypsin_2 superfamily Trypsin-like peptidase domain; This family includes trypsin like peptidase domains. - 55.7122 1.14E-08 1565 - 1785 superfamily 267656
LRR_4 superfamily Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number... - 43.2424 4.91E-05 397 - 433 superfamily 257306
LRR_4 superfamily Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number... - 43.2424 4.91E-05 397 - 433 superfamily 257306
LRR_4 superfamily Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number... - 43.2424 4.91E-05 397 - 433 superfamily 257306
LRR_4 superfamily Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number... - 43.2424 4.91E-05 397 - 433 superfamily 257306
LRR_RI superfamily Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue... - 43.113 0.00045724 367 - 522 superfamily 238064

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 184845 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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