PHATRDRAFT_49387 transcriptional coactivator caper (rrm superfamily) (RRM2_gar2)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_49387 chr_22 transcriptional coactivator caper (rrm superfamily) (RRM2_gar2) 116969 118065 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0216

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0047
 0.27

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM2_gar2 RNA recognition motif 2 in yeast protein gar2 and similar proteins; This subfamily corresponds to... cl17169 120.94 4.25E-34 255 - 327 specific 240894
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 77.2684 3.83E-18 142 - 214 superfamily 266524
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 77.2684 3.83E-18 142 - 214 superfamily 266524
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 74.213 2.28E-15 101 - 323 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 180614 319118 419394 Not available AT2G37220.1 489640

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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