PHATRDRAFT_49415 cobalamin synthesisp47k (COG0523)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_49415 chr_22 cobalamin synthesisp47k (COG0523) 197990 199750 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0385

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0058
 0.36

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
cobW CobW/HypB/UreG, nucleotide-binding domain; This domain is found in HypB, a hydrogenase expression... cl17203 147.386 2.55E-41 77 - 275 specific 251330
Fer4_NifH superfamily The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain.... - 147.386 2.55E-41 77 - 275 superfamily 266552
CobW_C Cobalamin synthesis protein cobW C-terminal domain; CobW proteins are generally found proximal to... cl08458 84.9562 8.79E-20 383 - 545 specific 214844
CobW_C superfamily Cobalamin synthesis protein cobW C-terminal domain; This is a large and diverse family of putative... - 84.9562 8.79E-20 383 - 545 superfamily 263667
COG0523 Putative GTPases (G3E family) [General function prediction only] - 206.377 6.86E-61 76 - 545 multi-dom 223597

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
261748 Not available 149146 285205 Not available Cre09.g406983.t1.1 Not available 306319

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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