PHATRDRAFT_49592 (LmjF365940-deam)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_49592	chr_23	(LmjF365940-deam)	137015	139951	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0376

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0056	0.30	3100 58000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
cytidine_deaminase		Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active...	cl00269	41.5578	0.000118236	720 - 765	specific	238610
cytidine_deaminase-like superfamily		Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases...	-	41.5578	0.000118236	720 - 765	superfamily	260314
LmjF365940-deam superfamily		A distinct subfamily of CDD/CDA-like deaminases; A distinct branch of the CDD/CDA-like deaminases...	-	201.518	1.57E-59	685 - 977	superfamily	258579
LmjF365940-deam superfamily		A distinct subfamily of CDD/CDA-like deaminases; A distinct branch of the CDD/CDA-like deaminases...	-	201.518	1.57E-59	685 - 977	superfamily	258579

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	243517	325849	Not available	Not available	Not available	566494

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments