PHATRDRAFT_50138 (Nipped-B_C)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_50138 chr_27 (Nipped-B_C) 162501 167882 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0100

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0050
 0.33

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Nipped-B_C superfamily Sister chromatid cohesion C-terminus; This domain lies towards the C-terminus of nipped-B or sister... - 161.263 2.88E-44 1312 - 1524 superfamily 257332
Nipped-B_C superfamily Sister chromatid cohesion C-terminus; This domain lies towards the C-terminus of nipped-B or sister... - 161.263 2.88E-44 1312 - 1524 superfamily 257332
PHD PHD zinc finger; The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in... cl17445 51.0586 8.36E-08 542 - 584 specific 214584
PHD superfamily PHD-finger; PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner... - 51.0586 8.36E-08 542 - 584 superfamily 266687
Cohesin_HEAT superfamily HEAT repeat associated with sister chromatid cohesion; This HEAT repeat is found most frequently in... - 49.7866 2.17E-07 749 - 786 superfamily 257281
Cohesin_HEAT superfamily HEAT repeat associated with sister chromatid cohesion; This HEAT repeat is found most frequently in... - 49.7866 2.17E-07 749 - 786 superfamily 257281

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
21122 Not available 166602 65494 Not available Not available AT5G15540.2 349205

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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