PHATRDRAFT_50326 superkiller viralicidic activity 2-like 2 (COG4581)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_50326 chr_28 superkiller viralicidic activity 2-like 2 (COG4581) 311273 315060 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0215

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0226
 0.15

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 95.482 1.89E-22 103 - 234 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 95.482 1.89E-22 103 - 234 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 64.1812 5.65E-12 385 - 485 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 64.1812 5.65E-12 385 - 485 superfamily 238034
rRNA_proc-arch rRNA-processing arch domain; Mtr4 is the essential RNA helicase, and is an exosome-activating... cl00354 266.738 1.17E-81 531 - 794 specific 257592
KOW superfamily KOW: an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese); KOW domain is... - 266.738 1.17E-81 531 - 794 superfamily 260377
DSHCT superfamily DSHCT (NUC185) domain; This C terminal domain is found in DOB1/SK12/helY-like DEAD box helicases. - 214.387 4.58E-64 816 - 998 superfamily 254631
DSHCT superfamily DSHCT (NUC185) domain; This C terminal domain is found in DOB1/SK12/helY-like DEAD box helicases. - 214.387 4.58E-64 816 - 998 superfamily 254631
COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] - 833.964 0 1 - 998 multi-dom 226947

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 203089 Not available 50949 Cre02.g117900.t1.1 AT1G59760.1 528925

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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