PHATRDRAFT_50425 (Nsp1_C superfamily)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_50425	chr_29	(Nsp1_C superfamily)	322054	323583	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0130

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0035	0.39	230 940

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Nsp1_C superfamily		Nsp1-like C-terminal region; This family probably forms a coiled-coil. This important region of...	-	48.075	4.95E-07	312 - 430	superfamily	252983

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
5225		Not available	256517	56847	Not available	Not available	AT2G45000.1	327965

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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