PHATRDRAFT_51005 ligase i (PRK01109)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_51005 chr_11 ligase i (PRK01109) 534095 536168 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0147

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0256
 0.28

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Adenylation_DNA_ligase_I_Euk Adenylation domain of eukaryotic DNA Ligase I; ATP-dependent polynucleotide ligases catalyze... cl12015 376.896 5.53E-127 264 - 484 specific 185710
Adenylation_DNA_ligase_like superfamily Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases; ATP-dependent... - 376.896 5.53E-127 264 - 484 superfamily 264509
OBF_DNA_ligase_I The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA... cl08424 264.724 9.10E-85 489 - 635 specific 153438
OBF_DNA_ligase_family superfamily The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part... - 264.724 9.10E-85 489 - 635 superfamily 263645
DNA_ligase_A_N superfamily DNA ligase N terminus; This region is found in many but not all ATP-dependent DNA ligase enzymes (... - 166.635 5.86E-48 1 - 188 superfamily 252736
DNA_ligase_A_N superfamily DNA ligase N terminus; This region is found in many but not all ATP-dependent DNA ligase enzymes (... - 166.635 5.86E-48 1 - 188 superfamily 252736
PRK01109 ATP-dependent DNA ligase; Provisional - 479.853 1.32E-161 1 - 636 multi-dom 234900

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
268404 Not available 229877 188840 420219 Cre07.g325716.t1.1 AT1G08130.1 532805

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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