PHATRDRAFT_52108 glycosyl hydrolases family 38expressed (GH38N_AMII_LAM_like)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_52108 chr_11 glycosyl hydrolases family 38expressed (GH38N_AMII_LAM_like) 280077 283174 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0436

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0031
 0.36

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GH38N_AMII_LAM_like N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside... cl17191 434.718 9.70E-145 1 - 279 specific 212121
GH38-57_N_LamB_YdjC_SF superfamily Catalytic domain of glycoside hydrolase (GH) families 38 and 57, lactam utilization protein LamB/... - 434.718 9.70E-145 1 - 279 superfamily 266542
Glyco_hydro_38C superfamily Glycosyl hydrolases family 38 C-terminal domain; Glycosyl hydrolases are key enzymes of... - 143.39 1.55E-36 473 - 810 superfamily 254403
Alpha-mann_mid Alpha mannosidase, middle domain; Members of this family adopt a structure consisting of three... cl08536 97.2873 9.16E-24 337 - 413 specific 255254
Alpha-mann_mid superfamily Alpha mannosidase, middle domain; Members of this family adopt a structure consisting of three... - 97.2873 9.16E-24 337 - 413 superfamily 263712

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
20349 Not available 179411 220670 431298 Not available AT5G13980.3 360129

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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