PHATRDRAFT_52607 chromosome associated protein (Smc)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_52607 chr_24 chromosome associated protein (Smc) 88863 92808 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0184

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0147
 0.26

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_SMC3_euk ATP-binding cassette domain of eukaryotic SMC3 proteins; The structural maintenance of chromosomes... cl17201 238.699 3.25E-71 3 - 203 specific 213239
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 157.807 1.04E-42 1125 - 1220 superfamily 266551
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 157.807 1.04E-42 1125 - 1220 superfamily 266551
SMC_hinge SMC proteins Flexible Hinge Domain; This entry represents the hinge region of the SMC (Structural... cl05797 96.1459 9.49E-23 529 - 639 specific 214944
SMC_hinge superfamily SMC proteins Flexible Hinge Domain; This family represents the hinge region of the SMC (Structural... - 96.1459 9.49E-23 529 - 639 superfamily 262671
Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] - 483.448 1.35E-149 1 - 1232 multi-dom 224117

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 208027 251818 457934 Cre10.g445650.t1.2 AT2G27170.2 321384

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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