PHATRDRAFT_54926 (Carboxyl_trans)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_54926 chr_18 (Carboxyl_trans) 291064 298130 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0135

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0010
 0.55

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-... cl11404 70.5227 3.49E-14 730 - 795 specific 133459
Biotinyl_lipoyl_domains superfamily Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the... - 70.5227 3.49E-14 730 - 795 superfamily 264355
ATP-grasp_4 superfamily ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent... - 187.894 4.05E-53 214 - 446 superfamily 266590
Biotin_carb_C Biotin carboxylase C-terminal domain; Biotin carboxylase is a component of the acetyl-CoA... cl08365 120.655 4.69E-31 484 - 590 specific 251532
Biotin_carb_C superfamily Biotin carboxylase C-terminal domain; Biotin carboxylase is a component of the acetyl-CoA... - 120.655 4.69E-31 484 - 590 superfamily 263607
CPSase_L_chain superfamily Carbamoyl-phosphate synthase L chain, N-terminal domain; Carbamoyl-phosphate synthase catalyses the... - 112.962 1.99E-28 90 - 206 superfamily 249744
CPSase_L_chain superfamily Carbamoyl-phosphate synthase L chain, N-terminal domain; Carbamoyl-phosphate synthase catalyses the... - 112.962 1.99E-28 90 - 206 superfamily 249744
Carboxyl_trans Carboxyl transferase domain; All of the members in this family are biotin dependent carboxylases.... - 522.189 7.48E-167 1472 - 2008 multi-dom 250315
AccC Biotin carboxylase [Lipid metabolism] - 397.793 3.71E-123 90 - 590 multi-dom 223516
ACC_central Acetyl-CoA carboxylase, central region; The region featured in this family is found in various... - 350.085 3.13E-103 856 - 1358 multi-dom 254731

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
12234 Not available 145710 318630 455280 Cre08.g373050.t1.1 AT1G36160.2 254604

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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