PHATRDRAFT_9090 26s proteasome regulatory particle triple-a atpase subunit5a (RPT1)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_9090	chr_1	26s proteasome regulatory particle triple-a atpase subunit5a (RPT1)	108664	110071	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0183

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0195	0.22	80 21000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	cl18944	91.8239	3.33E-22	175 - 347	specific	99707
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	91.8239	3.33E-22	175 - 347	superfamily	267297
RPT1		ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover,...	-	515.663	0	3 - 430	multi-dom	224143

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
516		Not available	173987	318633	428621	Cre10.g439150.t1.2	AT3G05530.1	557274

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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