PHATRDRAFT_9860 embryonic ectoderm development (WD40 superfamily)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_9860	chr_2	embryonic ectoderm development (WD40 superfamily)	42041	43294	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0265

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0051	0.31	15000 29000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	119.747	1.81E-31	23 - 318	superfamily	238121
COG2319		FOG: WD40 repeat [General function prediction only]	-	99.3927	1.10E-23	19 - 318	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
270065		Not available	250562	178470	462168	Cre16.g693750.t1.1	AT3G20740.1	552795

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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