10025 WD40 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10025 chr_15 WD40 superfamily 39661 41237 + WD40 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7441860 Thaps10025.2, Thaps10025.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0429

Most Highly Correlated Transcripts

35136

NA
0.9165

15398

FtsZ_type1
0.9058

bd789

(bd789) ABC_ATPase superfamily
0.9047

35728

FtsZ_type1
0.903

22673

NA
0.8935

22596

PLN02296
0.8931

261400

NA
0.8854

42867

Cytochrom_C1
0.8816

3229

hypothetical protein
0.8807

516

(RPT5) RPT1
0.8802

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 105.495 5.30E-26 103 - 390 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 94.7703 1.57E-21 98 - 390 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
41178 PHATRDRAFT_24996 PHATRDRAFT_24996 272526 250262 458280 Cre17.g715750.t1.2 AT2G30050.1 475312

KEGG

KEGG description KEGG Pathway
Protein processing in endoplasmic reticulum map04141

GO Terms

Not available -

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