10050 DUF2233Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
10050	chr_15	DUF2233	112638	114357	-	DUF2233

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451646	Thaps10050.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0214

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0281	0.33	5600 4000

Most Highly Correlated Transcripts

3842 hypothetical protein 0.9326	10886 hypothetical protein 0.9249	3206 CAP10 superfamily 0.9163	5659 hypothetical protein 0.9149	9166 hypothetical protein 0.911	8414 NA 0.9081
8599 hypothetical protein 0.9056	268266 KBL_like 0.9018	23013 Trs65 0.9017	6757 hypothetical protein 0.9

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF2233		Predicted periplasmic protein (DUF2233); This domain, found in various hypothetical bacterial...	cl19845	66.2022	8.68E-13	409 - 520	specific	255681
DUF2233 superfamily		Predicted periplasmic protein (DUF2233); This domain, found in various hypothetical bacterial...	-	66.2022	8.68E-13	409 - 520	superfamily	268198

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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