10559 HisA_HisFThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
10559	chr_17	HisA_HisF	66261	67361	+	HisA_HisF

Synonyms

NCBI ID	Ensembl Genomes exon ID
7453111	Thaps10559.1, Thaps10559.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0429

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0003	0.47	11000 2

Most Highly Correlated Transcripts

36007 Aldolase_II superfamily 0.9157	268443 SAICAR_synt_Sc 0.9113	38964 Chorismate_synthase 0.8973	12899 AAA 0.8972	264556 FBPase 0.8865	35728 FtsZ_type1 0.8858
35136 NA 0.8843	37497 cysE 0.8787	16295 FBPase 0.8758	bd1150 (bd1150) PLN02433 0.8709

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HisA_HisF		Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and...	cl17186	204.041	1.22E-64	2 - 259	specific	240074
TIM_phosphate_binding superfamily		TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an...	-	204.041	1.22E-64	2 - 259	superfamily	266538

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_50453	PHATRDRAFT_50453	185542	327519	61124	Cre12.g495300.t1.2	AT2G36230.1	286550

KEGG

KEGG description	KEGG Pathway
Biosynthesis of secondary metabolites	map01110

GO Terms

GO:0000105 GO:0003949 -

Add comment

Log in to post comments