11069 UAAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
11069	chr_19a_19	UAA	34389	35790	-	UAA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442625	Thaps11069.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0079

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0222	0.32	0.012 6000

Most Highly Correlated Transcripts

bd529 (bd529) SNF2_N 0.9029	22673 NA 0.8826	9490 hypothetical protein 0.8812	36669 TPT 0.879	bd2028 (bd2028) NA 0.8658	7446 hypothetical protein 0.8653
38306 Chloroa_b-bind 0.8647	14192 PLN02449 0.8637	bd1037 (bd1037) Ycf66_N 0.8636	21444 hypothetical protein 0.8636

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UAA		UAA transporter family; This family includes transporters with a specificity for UDP-N-...	-	145.441	1.12E-39	143 - 394	multi-dom	254807

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_48904	PHATRDRAFT_48904	157804	236920	207432	Cre02.g081500.t1.2	AT1G12600.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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