11585 CDC27Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
11585	chr_20	CDC27	561808	563507	+	CDC27

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447757	Thaps11585.1, Thaps11585.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0270

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0016	0.55	11 12

Most Highly Correlated Transcripts

40206 UAA 0.8958	18090 Thioredoxin_like superfamily 0.894	4433 hypothetical protein 0.8905	25279 TCP1_zeta 0.8854	7251 hypothetical protein 0.8829	11455 EXS 0.872
8830 (rfC_1) PLN03025 0.8711	264699 ATS1 0.8692	29469 hypothetical protein 0.8673	38149 Acatn superfamily 0.867

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CDC27		DNA polymerase subunit Cdc27; This protein forms the C subunit of DNA polymerase delta. It carries...	-	71.4062	1.65E-13	355 - 555	multi-dom	255401

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments