11842 sigpep_I_bact
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
11842 chr_22 sigpep_I_bact 590407 591135 + sigpep_I_bact

Synonyms

NCBI ID Ensembl Genomes exon ID
7442862 Thaps11842.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0360

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0109
 0.50

Most Highly Correlated Transcripts

bd1806

(bd1806) AAT_I superfamily
0.8802

11841

hypothetical protein
0.8762

bd1877

(bd1877) NA
0.8731

bd930

(bd930) HA
0.8561

bd1946

(bd1946) NA
0.8493

bd524

(bd524) NA
0.8491

33312

NnrU superfamily
0.8473

9115

DnaJ
0.8381

bd1667

(bd1667) Mpp10
0.8344

11229

COG1272
0.8281

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
sigpep_I_bact signal peptidase I, bacterial type; This model represents signal peptidase I from most bacteria.... - 69.1958 5.31E-15 12 - 222 multi-dom 233790

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 261512 208220 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006508 GO:0008236 GO:0004244 GO:0008717 -

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008236

serine-type peptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

GO:0004244

NA

Details: 
NA
GO Category: 
NA

GO:0008717

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments