12104 IF-2B superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
12104 chr_23 IF-2B superfamily 387395 388873 + IF-2B superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448910 Thaps12104.2, Thaps12104.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0130

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0264
 0.37

Most Highly Correlated Transcripts

8130

hypothetical protein
0.9138

5519

hypothetical protein
0.9138

4333

hypothetical protein
0.9036

5614

hypothetical protein
0.9027

1166

hypothetical protein
0.8919

34590

nt_trans superfamily
0.8915

2564

hypothetical protein
0.8913

3842

hypothetical protein
0.8888

1101

hypothetical protein
0.888

20615

hypothetical protein
0.8867

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
IF-2B superfamily Initiation factor 2 subunit family; This family includes initiation factor 2B alpha, beta and delta... - 75.4855 1.97E-15 198 - 466 superfamily 260372
Nudix_Hydrolase superfamily Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes... - 63.5249 3.04E-12 10 - 179 superfamily 260427

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
33417 Not available 154960 97622 57877 Cre17.g702150.t1.2 AT4G37200.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003743 GO:0005525 GO:0005851 GO:0006413 -

GO:0003743

translation initiation factor activity

Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO Category: 
MF

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0005851

eukaryotic translation initiation factor 2B complex

Details: 
A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon.
GO Category: 
CC

GO:0006413

translational initiation

Details: 
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
GO Category: 
BP

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