15822 WD40 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
15822 chr_19a_19 WD40 superfamily 131781 133355 - WD40 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449884 Thaps15822.4, Thaps15822.1, Thaps15822.3, Thaps15822.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0326

Most Highly Correlated Transcripts

39741

(APM3) AP-3_Mu3_Cterm
0.9148

13308

PLN02948
0.896

38469

WD40
0.8944

262088

CHD
0.8921

31822

WD40
0.8859

40200

TRX_reduct
0.8833

267979

HCO3_cotransp superfamily
0.8829

1102

hypothetical protein
0.8818

20659

hypothetical protein
0.8769

19158

GRX_PICOT_like
0.8756

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 78.5308 6.34E-17 33 - 319 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 73.9695 8.26E-15 33 - 321 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_4700 PHATRDRAFT_4700 Not available 236563 71210 Not available Not available 350501

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

Not available -

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