16193 S49_Sppa_N_C
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
16193 chr_19b_31 S49_Sppa_N_C 9791 12052 + S49_Sppa_N_C

Synonyms

NCBI ID Ensembl Genomes exon ID
7444355 Thaps16193.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0013

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0163
 0.38

Most Highly Correlated Transcripts

261400

NA
0.9422

262977

NA
0.9333

38964

Chorismate_synthase
0.9229

268908

Trans_IPPS_HH
0.9184

13393

PLN02321
0.9164

4524

DHQS
0.9136

6716

CDP-OH_P_transf superfamily
0.8984

16295

FBPase
0.897

31829

CBS_like
0.8957

263132

Phytochelatin superfamily
0.8953

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad; Signal peptide... cl15763 171.516 5.02E-49 460 - 661 specific 132934
Clp_protease_like superfamily Caseinolytic protease (ClpP) is an ATP-dependent protease; Clp protease (caseinolytic protease;... - 171.516 5.02E-49 460 - 661 superfamily 265774

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_4014 PHATRDRAFT_4014 186872 233786 456568 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006508 GO:0008233 -

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008233

peptidase activity

Details: 
Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
GO Category: 
MF

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