17008 RNase_HII_eukaryota_likeThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
17008	chr_5	RNase_HII_eukaryota_like	189787	191300	-	RNase_HII_eukaryota_like

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448459	Thaps17008.3, Thaps17008.1, Thaps17008.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0086

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0222	0.32	0.012 6000

Most Highly Correlated Transcripts

35387 (cdc2) PKc_like superfamily 0.8655	9238 hypothetical protein 0.8607	3071 NA 0.8582	20405 GRX_GRXh_1_2_like 0.8471	33955 Pkinase 0.8416	33578 Rab 0.8413
5047 hypothetical protein 0.8404	37328 PriL_PriS_Eukaryotic 0.8378	37585 MECDP_synthase 0.8375	5009 hypothetical protein 0.831

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RNase_HII_eukaryota_like		Eukaryotic RNase HII; This family includes eukaryotic type 2 RNase H (RNase HII or H2) which is...	cl14782	345.273	9.13E-118	108 - 326	specific	260002
RNase_H_like superfamily		Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of...	-	345.273	9.13E-118	108 - 326	superfamily	265450

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_32830	PHATRDRAFT_32830	240250	323232	462234	Cre17.g701350.t1.1	AT2G25100.1	545238

KEGG

KEGG description	KEGG Pathway
DNA replication	map03030

GO Terms

GO:0003723 GO:0004523 GO:0004524 -

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