19501 (RS10) S10_plectin
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
19501 chr_4 (RS10) S10_plectin 452507 452923 + S10_plectin

Synonyms

NCBI ID Ensembl Genomes exon ID
7447447 Thaps19501.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0047

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0019
 0.40

Most Highly Correlated Transcripts

bd989

(bd989) rps20
0.8043

bd729

(bd729) NA
0.7766

268651

(RS9) PLN00189
0.757

32752

(RL24) Ribosomal_L24e_L24 superfamily
0.7441

39424

(RL12) PLN03072
0.7204

26046

(RS3A) Ribosomal_S3Ae
0.7143

37809

PTZ00154
0.6752

39735

(RL27A) Ribosomal_L18e superfamily
0.6747

19541

(RL28) Ribosomal_L28e
0.6479

264201

(RL8) PTZ00180
0.6468

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
S10_plectin Plectin/S10 domain; This presumed domain is found at the N-terminus of some isoforms of the... cl02102 156.207 9.50E-50 3 - 96 specific 252003
S10_plectin superfamily Plectin/S10 domain; This presumed domain is found at the N-terminus of some isoforms of the... - 156.207 9.50E-50 3 - 96 superfamily 261176

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_27851 PHATRDRAFT_27851 273645 308046 433093 Cre09.g411100.t1.2 AT5G41520.1 286426

KEGG

KEGG description KEGG Pathway
Ribosome map03010

GO Terms

Not available -

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