19526 PRK07449
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
19526 chr_8 PRK07449 755129 759661 + PRK07449

Synonyms

NCBI ID Ensembl Genomes exon ID
7449812 Thaps19526.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0039

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0127
 0.38

Most Highly Correlated Transcripts

30701

PRK05279
0.928

22673

NA
0.8847

268192

Zip superfamily
0.8732

24525

hypothetical protein
0.8719

24832

hypothetical protein
0.8698

36641

Aldolase_Class_I superfamily
0.8658

268343

NA
0.8637

31451

rplO
0.8581

36669

TPT
0.8547

36525

PRK09427
0.8539

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of... cl01629 158.913 8.85E-44 256 - 438 specific 238967
TPP_enzymes superfamily Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes... - 158.913 8.85E-44 256 - 438 superfamily 261022
enolase_like superfamily Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is... - 115.82 4.99E-28 882 - 1259 superfamily 266540
Hydrolase_4 superfamily Putative lysophospholipase; This domain is found in bacteria and eukaryotes and is approximately... - 84.5054 9.43E-18 495 - 806 superfamily 267493
SRPBCC superfamily START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily; SRPBCC domains... - 66.0887 2.97E-12 1358 - 1479 superfamily 265438
menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; This protein catalyzes the... - 137.345 1.88E-35 498 - 806 multi-dom 234315
menC_gamma/gm+ o-succinylbenzoate synthase; This model describes the enzyme o-succinylbenzoic acid synthetase (... - 105.275 2.81E-24 882 - 1250 multi-dom 233641
PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated - 216.606 1.63E-59 4 - 451 multi-dom 236020

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11048 PHATRDRAFT_11048 163832 159973 96767 Cre16.g659050.t1.1 AT1G68890.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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