19631 EFh
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
19631 chr_1 EFh 2517120 2518772 - EFh

Synonyms

NCBI ID Ensembl Genomes exon ID
7449081 Thaps19631.1, Thaps19631.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0268

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0286
 0.31

Most Highly Correlated Transcripts

261117

0.8487

22442

CHD
0.8289

22244

hypothetical protein
0.8256

262616

(MYB22)
0.8108

264323

SET
0.8027

5904

NhaP
0.8023

10041

hypothetical protein
0.802

22477

hypothetical protein
0.8018

264711

(ZFP3) zinc finger like protein
0.7999

21568

hypothetical protein
0.7994

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EFh superfamily EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal... - 84.5217 4.08E-20 314 - 376 superfamily 238008
EFh superfamily EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal... - 84.5217 4.08E-20 314 - 376 superfamily 238008
C2 C2 domain; The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-... cl14603 81.3443 1.60E-18 152 - 244 specific 175973
C2 superfamily C2 domain; The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-... - 81.3443 1.60E-18 152 - 244 superfamily 265430
EF-hand_7 EF-hand domain pair; EF-hand domain pair. - 62.4012 3.03E-12 320 - 375 multi-dom 257819

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available 313588

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005509 -

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

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