22442 CHD
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22442 chr_4 CHD 2017462 2023041 + CHD

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0269

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0147
 0.38

Most Highly Correlated Transcripts

21568

hypothetical protein
0.9402

22244

hypothetical protein
0.9285

24235

Peptidase_C19 superfamily
0.9273

20666

RabGAP-TBC
0.922

5875

hypothetical protein
0.9143

24141

FH2 superfamily
0.9105

269997

COG1112
0.9034

31145

COG4581
0.9012

21752

hypothetical protein
0.9006

261324

PLN02724
0.8991

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CHD cyclase homology domain; Catalytic domains of the mononucleotidyl cyclases (MNC's), also... cl11967 75.3082 5.70E-15 253 - 488 specific 143636
Nucleotidyl_cyc_III superfamily Class III nucleotidyl cyclases; Class III nucleotidyl cyclases are the largest, most diverse group... - 75.3082 5.70E-15 253 - 488 superfamily 264492
CHD cyclase homology domain; Catalytic domains of the mononucleotidyl cyclases (MNC's), also... cl11967 75.3082 5.70E-15 253 - 488 specific 143636
Nucleotidyl_cyc_III superfamily Class III nucleotidyl cyclases; Class III nucleotidyl cyclases are the largest, most diverse group... - 75.3082 5.70E-15 253 - 488 superfamily 264492

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43378 PHATRDRAFT_43378 Not available Not available 438355 Not available Not available 501470

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0007242 GO:0009190 GO:0016849 -

GO:0007242

NA

Details: 
NA
GO Category: 
NA

GO:0009190

cyclic nucleotide biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue.
GO Category: 
BP

GO:0016849

phosphorus-oxygen lyase activity

Details: 
Catalysis of the cleavage of a phosphorus-oxygen bond by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond.
GO Category: 
MF

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