19826 LSm1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
19826 chr_7 LSm1 1052428 1053312 + LSm1

Synonyms

NCBI ID Ensembl Genomes exon ID
7444143 Thaps19826.1, Thaps19826.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0055

Most Highly Correlated Transcripts

30701

PRK05279
0.9478

25033

tRNA_bind_EMAP-II_like
0.9451

41655

Chloroa_b-bind
0.9375

32216

(RT5) rpsE_bact
0.9353

23819

hypothetical protein
0.9352

10493

Ribosomal_L7_L12
0.9308

262305

DnaJ_bact
0.9297

42652

DRG
0.9294

268577

(GGTA1) PLN02789
0.9282

36764

PRK05279
0.9266

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LSm1 Like-Sm protein 1; The eukaryotic LSm proteins (LSm1-7) assemble into a hetero-heptameric ring... cl00259 119.543 6.73E-34 149 - 226 specific 212475
Sm_like superfamily Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form... - 119.543 6.73E-34 149 - 226 superfamily 260307

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50048 PHATRDRAFT_50048 214447 171797 443046 Cre12.g538750.t1.2 AT3G14080.2 316685

KEGG

KEGG description KEGG Pathway
RNA degradation map03018

GO Terms

GO:0005634 GO:0005732 GO:0006397 GO:0030529 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0005732

small nucleolar ribonucleoprotein complex

Details: 
A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
GO Category: 
CC

GO:0006397

mRNA processing

Details: 
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO Category: 
BP

GO:0030529

ribonucleoprotein complex

Details: 
A macromolecular complex containing both protein and RNA molecules.
GO Category: 
CC

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