25033 tRNA_bind_EMAP-II_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25033 chr_15 tRNA_bind_EMAP-II_like 611473 612537 - tRNA_bind_EMAP-II_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7443946 Thaps25033.3, Thaps25033.2, Thaps25033.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0008

Most Highly Correlated Transcripts

19826

LSm1
0.9451

6952

hypothetical protein
0.9289

32285

COG1832
0.9249

30701

PRK05279
0.9229

1088

hypothetical protein
0.9205

5105

hypothetical protein
0.9154

10493

Ribosomal_L7_L12
0.9079

36641

Aldolase_Class_I superfamily
0.9071

20712

hypothetical protein
0.9038

268577

(GGTA1) PLN02789
0.8997

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
tRNA_bind_EMAP-II_like tRNA-binding-domain-containing EMAP2-like proteins. This family contains a diverse fraction of tRNA... cl00320 149.301 1.63E-45 66 - 170 specific 239198
tRNA_bindingDomain superfamily The tRNA binding domain is also known as the Myf domain in literature. This domain is found in a... - 149.301 1.63E-45 66 - 170 superfamily 260352

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_13445 PHATR_13445 267434 151812 Not available Not available Not available 473468

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000049 GO:0004812 GO:0016876 -

GO:0000049

tRNA binding

Details: 
Interacting selectively and non-covalently with transfer RNA.
GO Category: 
MF

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0016876

ligase activity, forming aminoacyl-tRNA and related compounds

Details: 
Catalysis of the joining of an amino acid and a nucleic acid (usually tRNA) or poly(ribitol phosphate), with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. The reaction forms an aminoacyl-tRNA or a related compound.
GO Category: 
MF

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