20086 RRM_SF3B14Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
20086	chr_1	RRM_SF3B14	784736	785354	-	RRM_SF3B14

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451508	Thaps20086.2, Thaps20086.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0420

Most Highly Correlated Transcripts

9115 DnaJ 0.9061	3348 hypothetical protein 0.9044	41211 rpmG 0.8999	1175 hypothetical protein 0.8977	bd1934 (bd1934) NA 0.8969	21288 dsDNA_bind 0.8959
3570 PP2Cc 0.8942	6997 hypothetical protein 0.8927	264781 syntaxin 0.892	22958 hypothetical protein 0.8918

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM_SF3B14		RNA recognition motif found in pre-mRNA branch site protein p14 (SF3B14) and similar proteins; This...	cl17169	156.623	8.00E-50	34 - 111	specific	240687
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	156.623	8.00E-50	34 - 111	superfamily	266524
COG0724		RNA-binding proteins (RRM domain) [General function prediction only]	-	76.5242	1.49E-17	31 - 117	multi-dom	223796

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_8132	PHATR_8132	215433	152941	63012	Cre03.g158950.t1.1	AT5G12190.1	312714

KEGG

KEGG description	KEGG Pathway
Spliceosome	map03040

GO Terms

GO:0003676 GO:0003755 GO:0004600 GO:0030051 GO:0042027 -

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