20630 Piwi-like superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
20630	chr_1	Piwi-like superfamily	475245	479384	-	Piwi-like superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449733	Thaps20630.9, Thaps20630.14, Thaps20630.10, Thaps20630.4, Thaps20630.13, Thaps20630.1, Thaps20630.5, Thaps20630.6, Thaps20630.3, Thaps20630.12, Thaps20630.7, Thaps20630.11, Thaps20630.2, Thaps20630.8

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0415

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0020	0.47	9500 1

Most Highly Correlated Transcripts

22947 zf-UBR 0.9173	3719 DECH_helic 0.9084	263610 COG3899 0.9037	1268 hypothetical protein 0.9033	24852 hypothetical protein 0.9013	25600 hypothetical protein 0.9006
5829 hypothetical protein 0.8988	23130 NT_PAP_TUTase 0.8968	264262 COG3899 0.896	262120 ABC_ATPase superfamily 0.8916

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Piwi-like superfamily		Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to...	-	94.6022	1.20E-20	774 - 961	superfamily	260542

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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