20686 RanBD_NUP50Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
20686	chr_1	RanBD_NUP50	775568	777253	-	RanBD_NUP50

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451561	Thaps20686.1, Thaps20686.2, Thaps20686.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0326

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0084	0.43	0.00000000066 0.00000023

Most Highly Correlated Transcripts

bd524 (bd524) NA 0.9179	22690 RRM_Nop6 0.896	bd621 (bd621) NA 0.8846	21973 G-patch 0.8785	5907 hypothetical protein 0.878	2318 Bromodomain 0.8755
5036 Josephin superfamily 0.8701	41038 (P5CS) PLN02418 0.8669	2443 hypothetical protein 0.8654	41979 PRK06116 0.8641

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RanBD_NUP50		Nucleoporin 50 Ran-binding domain; NUP50 acts as a cofactor for the importin-alpha:importin-beta...	cl17171	96.1932	6.40E-24	386 - 495	specific	241324
PH-like superfamily		Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like and...	-	96.1932	6.40E-24	386 - 495	superfamily	266526

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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