20726 (MDH1) PLN00106
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20726 chr_1 (MDH1) PLN00106 985790 987246 + PLN00106

Synonyms

NCBI ID Ensembl Genomes exon ID
7445648 Thaps20726.3, Thaps20726.1, Thaps20726.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0366

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0109
 0.50

Most Highly Correlated Transcripts

36971

PRK05704
0.8261

21640

Iso_dh superfamily
0.791

36716

(LPD) PRK06327
0.7907

411

(SCS2) PTZ00187
0.7905

bd1806

(bd1806) AAT_I superfamily
0.7857

7540

HP_PGM_like
0.7817

bd524

(bd524) NA
0.7727

bd643

(bd643) NA
0.7684

264364

PLN02929
0.7633

bd1840

(bd1840) NA
0.7581

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases; MDH is one of the key enzymes in the citric... cl17195 526.287 0 35 - 350 specific 133422
LDH_MDH_like superfamily NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family; Members of... - 526.287 0 35 - 350 superfamily 266546
PLN00106 malate dehydrogenase - 559.954 0 16 - 345 multi-dom 215058

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42398 PHATRDRAFT_42398 287426 179958 451022 Cre12.g483950.t1.2 AT1G53240.1 286325

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0006100 GO:0016491 GO:0006108 GO:0016615 GO:0030060 -

GO:0006100

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0006108

malate metabolic process

Details: 
The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle.
GO Category: 
BP

GO:0016615

malate dehydrogenase activity

Details: 
Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate.
GO Category: 
MF

GO:0030060

L-malate dehydrogenase activity

Details: 
Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+.
GO Category: 
MF

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