20816 PLPDE_IV superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20816 chr_1 PLPDE_IV superfamily 1417071 1418726 - PLPDE_IV superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7451467 Thaps20816.3, Thaps20816.1, Thaps20816.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0421

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0249
 0.31

Most Highly Correlated Transcripts

bd1941

(bd1941) NA
0.9343

bd410

(bd410) HNHc
0.9197

bd415

(bd415) arom_aa_hydroxylase superfamily
0.9157

bd1841

(bd1841) CAP10 superfamily
0.915

260934

PLPDE_IV superfamily
0.9149

261158

calcium channel
0.9026

23047

hypothetical protein
0.8961

22671

UbiH
0.8952

4481

COG1011
0.8938

bd1839

(bd1839) NA
0.8828

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLPDE_IV superfamily PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid... - 230.16 1.82E-71 121 - 448 superfamily 260277

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 259813 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0003824 GO:0008152 GO:0004084 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0004084

branched-chain-amino-acid transaminase activity

Details: 
Catalysis of the reaction: a branched-chain amino acid + 2-oxoglutarate = L-glutamate + a 2-oxocarboxylate derived from the branched-chain amino acid.
GO Category: 
MF

Add comment

Log in to post comments