20993 hslU
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20993 chr_1 hslU 2439955 2441747 + hslU

Synonyms

NCBI ID Ensembl Genomes exon ID
7449062 Thaps20993.1, Thaps20993.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0113

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0263
 0.34

Most Highly Correlated Transcripts

263182

DUF1350 superfamily
0.8877

31829

CBS_like
0.8754

4829

hypothetical protein
0.8667

1788

hypothetical protein
0.8665

6472

hypothetical protein
0.8661

269624

TIM_phosphate_binding superfamily
0.8649

13393

PLN02321
0.8645

20998

HOOK
0.8627

928

LPLAT superfamily
0.8616

24495

(Tp_CCHH26) regulator [Rayko]
0.8597

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA_2 AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected by the... cl18944 93.4135 3.92E-22 353 - 442 specific 254386
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 93.4135 3.92E-22 353 - 442 superfamily 267297
ClpB_D2-small C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein,... cl11083 72.0911 1.91E-15 448 - 537 specific 198154
ClpB_D2-small superfamily C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein,... - 72.0911 1.91E-15 448 - 537 superfamily 264218
hslU ATP-dependent protease ATP-binding subunit HslU; Provisional - 646.75 0 106 - 557 multi-dom 235364

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_41790 PHATR_41790 158033 237331 456273 Cre12.g510900.t1.2 Not available 469020

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000166 GO:0017111 GO:0005515 GO:0005524 GO:0005737 GO:0009376 GO:0009377 GO:0016887 -

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

GO:0005515

protein binding

Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0009376

HslUV protease complex

Details: 
A protein complex that possesses ATP-dependent protease activity; consists of an ATPase large subunit with homology to other Clp family ATPases and a peptidase small subunit related to the proteasomal beta-subunits of eukaryotes. In the E. coli complex, six identical subunits of both the ATPase, ClpY, and the protease, ClpQ, self-assemble into an oligomeric ring, and two rings of each subunit, two ClpQ rings surrounded by single ClpY rings, form a dumbbell-shaped complex.
GO Category: 
CC

GO:0009377

NA

Details: 
NA
GO Category: 
NA

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

Add comment

Log in to post comments