21140 RINGThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21140	chr_2	RING	321753	323181	-	RING

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452200	Thaps21140.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0421

Most Highly Correlated Transcripts

21090 hypothetical protein 0.9296	bd690 (bd690) NA 0.9289	bd1840 (bd1840) NA 0.9279	bd1946 (bd1946) NA 0.9198	bd1934 (bd1934) NA 0.9155	6723 hypothetical protein 0.9145
25036 hypothetical protein 0.9136	9115 DnaJ 0.913	1186 hypothetical protein 0.9129	42646 PRK04342 0.9079

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RING		RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60...	cl17238	60.5372	6.62E-12	415 - 458	specific	238093
RING superfamily		RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60...	-	60.5372	6.62E-12	415 - 458	superfamily	266579

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_49280	PHATRDRAFT_49280	Not available	Not available	59061	Cre01.g051700.t1.1	AT3G55530.1	356170

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0000151 GO:0004842 GO:0008270 GO:0016567 -

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