21161 Patched
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21161 chr_2 Patched 403361 407216 + Patched

Synonyms

NCBI ID Ensembl Genomes exon ID
7448644 Thaps21161.2, Thaps21161.4, Thaps21161.3, Thaps21161.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0108

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0062
 0.41

Most Highly Correlated Transcripts

bd1840

(bd1840) NA
0.8982

270222

0.8952

25171

DUF1517 superfamily
0.8616

bd690

(bd690) NA
0.8565

bd1692

(bd1692) NA
0.8515

269541

M20_Acy1
0.8414

263883

hypothetical protein
0.8405

22187

ACD_sHsps_p23-like
0.8362

bd1835

(bd1835) NA
0.8318

bd1934

(bd1934) NA
0.8298

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sterol-sensing superfamily Sterol-sensing domain of SREBP cleavage-activation; Sterol regulatory element-binding proteins (... - 85.7184 6.97E-19 487 - 636 superfamily 256997
Patched Patched family; The transmembrane protein Patched is a receptor for the morphogene Sonic Hedgehog.... - 124.78 2.48E-29 417 - 1080 multi-dom 251310

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 455791 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008158 GO:0016020 -

GO:0008158

hedgehog receptor activity

Details: 
Combining with a member of the hedgehog protein family and transmitting the signal across the membrane to initiate a change in cell activity.
GO Category: 
MF

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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