21333 Reprolysin_3
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21333 chr_2 Reprolysin_3 1291915 1295089 - Reprolysin_3

Synonyms

NCBI ID Ensembl Genomes exon ID
7444694 Thaps21333.3, Thaps21333.4, Thaps21333.2, Thaps21333.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0459

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0153
 0.31

Most Highly Correlated Transcripts

23947

hypothetical protein
0.8409

23314

hypothetical protein
0.8363

6273

LRR_RI superfamily
0.8321

23521

hypothetical protein
0.83

269264

hypothetical protein
0.8164

23949

hypothetical protein
0.8076

24144

DnaJ
0.8065

268234

hypothetical protein
0.8062

20974

hypothetical protein
0.8042

21438

hypothetical protein
0.8004

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Reprolysin_3 Metallo-peptidase family M12B Reprolysin-like; This zinc-binding metallo-peptidase has the... cl00064 98.9359 6.76E-24 360 - 486 specific 257898
ZnMc superfamily Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches,... - 98.9359 6.76E-24 360 - 486 superfamily 260167

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004222 GO:0006508 GO:0008237 GO:0008270 -

GO:0004222

metalloendopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008237

metallopeptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

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