21336 Reprolysin_3
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21336 chr_2 Reprolysin_3 1316268 1320234 - Reprolysin_3

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0476

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0055
 0.46

Most Highly Correlated Transcripts

21463

hypothetical protein
0.8757

24018

hypothetical protein
0.8604

bd1880

(bd1880) NA
0.8556

3660

COG5038
0.8511

3139

hypothetical protein
0.848

5321

CobN-Mg_chel superfamily
0.8466

12116

(Tp_HSF_3.5b) HSF_DNA-bind superfamily
0.8399

586

PTZ00018
0.8393

21581

hypothetical protein
0.8385

4672

hypothetical protein
0.8381

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Reprolysin_3 Metallo-peptidase family M12B Reprolysin-like; This zinc-binding metallo-peptidase has the... cl00064 84.2983 8.20E-19 297 - 424 specific 257898
ZnMc superfamily Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches,... - 84.2983 8.20E-19 297 - 424 superfamily 260167

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004222 GO:0006508 GO:0008237 GO:0008270 -

GO:0004222

metalloendopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008237

metallopeptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

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