21591 HtpX
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21591 chr_3 HtpX 79923 80854 + HtpX

Synonyms

NCBI ID Ensembl Genomes exon ID
7452790 Thaps21591.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0012

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0071
 0.35

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9843

26769

ERG4_ERG24 superfamily
0.9117

3204

hypothetical protein
0.9066

261400

NA
0.8997

26991

GRX_GRXh_1_2_like
0.8945

20405

GRX_GRXh_1_2_like
0.8874

1911

hypothetical protein
0.885

3773

hypothetical protein
0.8784

3071

NA
0.8775

21168

hypothetical protein
0.8771

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover,... cl12018 91.5271 1.11E-21 96 - 292 specific 223575
Peptidase_M48 superfamily Peptidase family M48; Peptidase family M48. - 91.5271 1.11E-21 96 - 292 superfamily 264511

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 227384 319690 444177 Cre14.g620150.t1.1 AT3G27110.2 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004222 GO:0006508 GO:0016020 -

GO:0004222

metalloendopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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